You can use any of the FastEthernet port's mac address. It doesn't matter if that port is up or down. As long as you have TCP connectivity from the 3725 to the Callmanager, everything will work fine.
You can as well use one of your WAN interfaces as the sccp local interface. If you do so, then the router will use the mac address of the first ethernet interface to register with Callmanager. So if you prefer this method, make sure you add the mac address of the first ethernet interface as the Conf Bridge device.
Regards,
Anup