Another thing you need to consider is the provisioning type to be used; Legacy Agent or TMSPE.
TMSPE is highly recommended, but you need to look at the deployment guide for this:
http://www.cisco.com/en/US/docs/telepresence/infrastructure/tmspe/install_guide/Cisco_TMSPE_Deployment_Guide_1-0.pdf
As Ahmad said, the provisioning templates resides on TMS, however, you need to upload the provisioning schemas to TMS and then create template(s) from these.
In TMS go to System--->Provisioning--->Users and you should see, in the bottom, left hand corner, a link which says Configuration Templates. Click on that, then select Add Schema. This is where you upload the schema - and also where you create templates from the different schemas.
As far as registration goes, local users should register to the VCS-C, which also needs to have the provisioning option key installed, and external users should register to the VCS-E. (Provisioning option key should not be installed on the VCS-E unless you are in an environment where this is specifically required)
You can also proxy the external registrations to the VCS-C, but this is more the exception rather than the rule, however, the external users can of course also register with the VCS-C if they establish a VPN connection prior to logging in,
You also need to consider how you want your users to authenticate, i.e. whether you want them to authenticate towards a local database or against AD. Again, see the "Authenticating Devices" deployment guide.
/jens
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