Hi @Mohammad Katmawi
That´s one thing Cisco should improve on Prime urgently. But, for now is the only way. You can see for yourself that when on the you can´t choose any other option but AP only.
It is not necessary pick up one by one, you can select a series of AP on the page, drag to the Map and arrange it later. But, still, it is too demanding.
One promise option is the integration of Prime with Google Earth, which could give you the ability to use coordinates, but, this is useful for larger areas. Indoor environment I am afraid that could not be useful.
-If I helped you somehow, please, rate it as useful.-