Hello there @suneq
Within you current situation i would suggest you to open a tac case and get some assistance.
However here are some steps you can take.
Check the APIC via cli to see what / double check the status of the leaf using acidiag fnvread
Try performing a clean reboot of the leaf node, log in to the node (by what you mentioned you might need to go via console) and execute the following:
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>setup-clean-config.sh
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>reload
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