You cannot do this currently on the low-mid range appliances (5506-X through 5555-X) running FTD image as of FTD 6.1. This will most likely be added in a future release of FTD.
Reference: http://www.cisco.com/c/en/us/td/docs/security/firepower/610/fdm/fptd-fdm-config-guide-610/fptd-fdm-interfaces.html#concept_6940083A55184D009B6406EF167C9DD4 .
You can use the FX-OS chassis manager (high end 4100 and 9300 platforms) to create Etherchannel interfaces which are in turn available to the FTD image. References:
http://www.cisco.com/c/en/us/td/docs/security/firepower/quick_start/fp4100/ftd-4100-qsg.html#pgfId-139652
http://www.cisco.com/c/en/us/td/docs/security/firepower/fxos/fxos201/web-config/b_GUI_ConfigGuide_FXOS_201/interface_management.html