Hi Ivan,
port-security is concered with Layer2 controls to limit the number of devices that can appear on a single switchport. These controls will apply to both IPv4 and IPv6 since they are encapsulated in Layer2 frames.
If you use switchport access-group ACLs and these have been configured with just IPv4 addresses then yes, IPv6 traffic will pass by these. It is worth noting that the IPv6 traffic will be limited to the local-link (fe80:: addresses) so will only be able to communicate with other devices on the VLAN. Depending on your network topology these communications could span your entire network.
There is however no risk to the traffic leaving the link, unless you have configured ipv6 unicast routing on your VLANs router with corresponding IPv6 address on the SVI and are using either DHCPv6 or SLAAC to offer global unicast IPv6 addresses.
If you are concerned about IPv6 on your network, then I recommend you look at any material regarding First Hop Security:
http://www.cisco.com/web/about/security/intelligence/ipv6_first_hop.html
This is very good read too:
http://docwiki.cisco.com/wiki/FHS
cheers,
Seb.