Please provide more details like: Server OS, Java version, and what type of database you are using for the FM Server. Have you considered using a newer version of FM Server?
Have you looked at the Fabric Manager Server web interface? There is a Zone Analysis report available that should have what you are looking for.Otherwise, you could parse the output from a "show zone active vsan xx" with a script to find any zones ...
Make sure you have the enclosure names specified that you want to see in the map. The FM Server map relies on enclosure names. If you use device aliases (or even FC aliases), there is a button in the FM server information pane that will let you ap...