this message "Authen session timed out: Challenge not provided by client." means that AAA server timed out waiting on reply from end client. This is a very general in wireless networks and could also point towards client misbehaving and not replying to access-challenge in a timely fashion.
To authenticate users from multiple domain. First ensure that you have followed following document,
Windows Authentication Configuration:
http://www.cisco.com/en/US/docs/net_mgmt/cisco_secure_access_control_server_for_solution_engine/4.2/installation/guide/remote_agent/rawi.html#wp311476
Make sure that you are running compatible RA with ACS SE. Both must have same version.
This is how you can test, as example on an Access point CLI,
test aaa group radius legacy
Other then this. Increase the logging level on ACS to full. As you have ACS SE, check the WinAgent logs. They should provide you some more information, as why user authentication from trusted domain is failing.
Regards,
Prem
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