I assume you need 2 MDS 9148 per fabric because of the number of required F-ports, attaching hosts and storage ?
Anyway, I would recommend you create at least one vsan per fabric, and please different ! =/ 1
eg. vsan 10 for fabric A, and 20 for fabric B.
To attach UCS, you need to enable feature npiv and f-portchannel-trunking.
I would also avoid any configuration that links Brocade and MDS, because interop modes are really challenging.
Migration of one fabric and if successful, the other one as well is the way to go.
see also
http://www.cisco.com/c/en/us/products/collateral/storage-networking/mds-9700-series-multilayer-directors/white-paper-c11-732037.html