Did you follow the procedures in
http://www.cisco.com/c/en/us/td/docs/switches/datacenter/sw/nx-os/fcoe/configuration/guide/b_Cisco_NX-OS_FCoE_Configuration_Guide/configuring_fcoe_vlans_and_virtual_interfaces.html#task_C7F57ACF9BFD4ED4B398E5C184A781D2
FCoE in a dedicated storage VDC has the following guidelines:
- Enable the FCoE feature set in only one VDC.
- Create VLANs in the FCoE allocated VLAN range.
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Mapping a VSAN to a VLAN
A unique, dedicated VLAN must be configured at every converged access switch to carry traffic for each virtual fabric (VSAN) in the SAN (for example, VLAN 1002 for VSAN 10, VLAN 1003 for VSAN 2, and so on). If you enable MST, you must use a separate Multiple Spanning Tree (MST) instance for FCoE VLANs.