Remember that native VLAN can be changed per port and it needs to be changed per port in some situations.
If the management VLAN is tagged, it can't transport untagged frames. You would need to tag control frames on the switch.
If you configure APs, it's usually done in a way that you have one network as native network for management.
So if you have a switchport going to AP, you would configure it in following fashion:
switchport fa0/10
description TO_AP
switchport mode trunk
switchport trunk allowed vlan 10,20,950
switchport trunk native vlan 950
In this way, your management network would provide MGMT for AP, and Data and Guest networks would be tagged.
"If wireless AP management VLAN in LAN is 990 and native vlan is not there then who will forward untagged traffic by AP in LAN network". If you didn't tag VLAN 990 on AP, it just wouldn't work. AP would send untagged frames to switch and switch wouldn't know they are destined for VLAN 990, since it's tagged on port. Again, you would need to use switchport trunk native vlan 990 to make it work.
HTH..