Can't think of any immediate explanation...can you describe the call sequence, and JTAPI method/event sequence? Is this a basic lab situation, or a more complex cluster? You can attach the JTAPI logs here if you like.
As it may take some deeper digging (e.g. in to CTI Manager logs) to fully understand what's happening internally, would suggest opening a CDN Developer Support case:
http://developer.cisco.com/web/join-the-network/support-only