Hi Gilbert,
First, you need to confirm that your emails are indeed blocked by FTD.
You can check this by using nslookup/DNS and check the MX RR for the sending domain.
Then check FMC-> IPS Events/ File Events/Connection Events and look for drop/block events related to that specific IP.
Afterwards, if this is indeed the issue, you can create a separate firewall rule for SMTP traffic with the only purpose of attaching to it a custom IPS/AMP policy that does not block encrypted email attachments.
One reason for which your encrypted email attachments may not make it through the firewall is AMP (File Policy) where you might have enabled an advanced option like block encrypted archives/files or something similar.
Please take into account that encrypted file attachments can be blocked by FTD only if you're using plain old SMTP, that is with no STARTTLS.
BR,
Octavian