I believe you are aware of creating the standard Cisco IOS procedure for creating VLAN trunks.
under the interface configuration mode, in which you need to create a trunk,
switchport mode trunk
switchport mode trunk encapsulation isl/dot1q
switchport mode trunk native vlan
switchport mode trunk allowed vlans
But if you are already using these commands correctly, still you have the problem, I want you to let me know the following informations.
1. What error message you receive at the console while implementing trunking?
2. What is the other end device with which you are trying to establish trunk?.