Hi Oleg,
Thanks much for your question. Actually the performance of a VPN3000 with a SEP-E should improve over the SEP. The 3DES performance may remain unchanged due to system resource bottlenecks, but the hardware AES implementation will provide a performance boost in that area. The asymmetric key operations (DH, RSA, and DSA) should also see improvement with the newer SEP-E encryption module. Do keep in mind though that you can either use the SEP module or SEP-E module in the chassis at one time, having a SEP-E module with SEP modules in at the sametime will disable the SEP modules.
Hope this helps,
Regards,
Aamir Waheed,
Cisco Systems, Inc.
CCIE#8933
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