I would suggest that you use the Router based aggregation. Aggregation of export data is typically performed by NetFlow collection tools on management workstations. Router-based aggregation allows limited aggregation of NetFlow export records to occur on the router for the following benefits:
1. Reduce the required bandwidth between the router and the workstations
2. Reduce the number of collection workstations required
3. Improve performance and scalability on high flow-per-second routers