Hello,
a basic QoS policy would be fairly easy to implement. The exact syntax depends on the platform (e.g. ISR 4431) and the IOS version you are running. Do you know which TCP and/or UDP port the application uses ? If so, you can use those to classify the traffic, otherwise, use source and destination IP addresses.
So in short, we need to see the configuration of your main site router, and some informatiion about the application traffic you want to prioritize...