Hi,
Instance 0 (MST 0) the IST is especial instance that is used to carry the BPDUs to the IEEE address, however , The MST by definition , each instance has its own topology view and Spanning-tree calculation. This shouldnt impact other MST instances, basically it shouldnt happen.
You might have other reason for vrf svlan instance to fall back, you might check if you have some other changes/incidents took place in the Network.
Regards,
Mohamed