Greetings.
Are these the two 2.5" SSDs that are mounted on one of the PCIE risers internally?
If they are, you may need to remove them if you don't want your OS to see them at all.
You can certainly remove them from the boot order, which it sounds like you have already done, but you may need to open the case and remove the SSD drives.
Customer frequently order the PCIE riser option with the SSD drives so they can install the OS there (PCH controller), and leave the 24 hotplug drives free for data, CEF, Hadoop, etc.

Kirk...