There is no special precaution to take, just be aware that the APs will lose the controller, and will download their own code once re-joining it.
Be careful, the controller can upgrade 6 APs at a time, so some of your APs, if you have many, will get stranded if they timeout without being able to join. They'll be back after 30 mn, or you can powercycle them to speed up the process.
hth
Jerome